IL_6BY1_318

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AUAGC*GUGGGU

Length

11 nucleotides

Bulged bases

6BY1|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_318 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.3588

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6BY1|1|DA|A|2080
6BY1|1|DA|U|2081
6BY1|1|DA|A|2082
6BY1|1|DA|G|2083
6BY1|1|DA|C|2084
*
6BY1|1|DA|G|2235
6BY1|1|DA|U|2236
6BY1|1|DA|G|2237
6BY1|1|DA|G|2238
6BY1|1|DA|G|2239
6BY1|1|DA|U|2240

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DX

50S ribosomal protein L28