IL_6BY1_320

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6BY1|1|DA|U|2132

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_320 not in the Motif Atlas

Homologous match to IL_5J7L_330

Geometric discrepancy: 0.5563

The information below is about IL_5J7L_330

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6BY1|1|DA|C|2129
6BY1|1|DA|U|2130
6BY1|1|DA|U|2131
6BY1|1|DA|U|2132
6BY1|1|DA|G|2133
6BY1|1|DA|A|2134
6BY1|1|DA|A|2135
6BY1|1|DA|G|2136
*
6BY1|1|DA|U|2155
6BY1|1|DA|G|2156
6BY1|1|DA|G|2157
6BY1|1|DA|A|2158
6BY1|1|DA|G|2159

Current chains

Chain DA

23S ribosomal RNA

Nearby chains