IL_6BY1_330

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6BY1|1|DA|G|2576, 6BY1|1|DA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_330 not in the Motif Atlas

Geometric match to IL_4WF9_095

Geometric discrepancy: 0.1339

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6BY1|1|DA|C|2510
6BY1|1|DA|U|2511
6BY1|1|DA|C|2512
*
6BY1|1|DA|G|2574
6BY1|1|DA|C|2575
6BY1|1|DA|G|2576
6BY1|1|DA|A|2577
6BY1|1|DA|G|2578

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D1

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3