IL_6BY1_331

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

6BY1|1|DA|A|2572, 6BY1|1|DA|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_331 not in the Motif Atlas

Homologous match to IL_7RQB_098

Geometric discrepancy: 0.1083

The information below is about IL_7RQB_098

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71530.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6BY1|1|DA|C|2512
6BY1|1|DA|A|2513
*
6BY1|1|DA|U|2571
6BY1|1|DA|A|2572
6BY1|1|DA|C|2573
6BY1|1|DA|G|2574

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BV

Transfer RNA; tRNA

Chain DD

50S ribosomal protein L3

Chain DJ

50S ribosomal protein L13