IL_6BY1_369

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6BY1|1|CA|U|846, 6BY1|1|CA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_369 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1838

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6BY1|1|CA|A|844
6BY1|1|CA|A|845
6BY1|1|CA|U|846
6BY1|1|CA|U|847
6BY1|1|CA|C|848
*
6BY1|1|CA|G|930
6BY1|1|CA|U|931
6BY1|1|CA|U|932
6BY1|1|CA|A|933
6BY1|1|CA|U|934

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CZ

50S ribosomal protein L30