IL_6BY1_377

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

6BY1|1|CA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_377 not in the Motif Atlas

Homologous match to IL_4WF9_065

Geometric discrepancy: 0.1832

The information below is about IL_4WF9_065

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|A|1669
6BY1|1|CA|C|1670
6BY1|1|CA|U|1671
6BY1|1|CA|A|1672
6BY1|1|CA|G|1673
6BY1|1|CA|G|1674
*
6BY1|1|CA|C|1990
6BY1|1|CA|U|1991
6BY1|1|CA|G|1992
6BY1|1|CA|U|1993

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L3

Chain CK

50S ribosomal protein L14