IL_6BY1_382

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_382 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1576

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|U|2847
6BY1|1|CA|G|2848
6BY1|1|CA|U|2849
6BY1|1|CA|A|2850
6BY1|1|CA|A|2851
6BY1|1|CA|G|2852
*
6BY1|1|CA|U|2865
6BY1|1|CA|U|2866
6BY1|1|CA|G|2867
6BY1|1|CA|A|2868
6BY1|1|CA|G|2869

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CN

50S ribosomal protein L17

Chain CP

50S ribosomal protein L19