IL_6BY1_392

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GUAAGC*GUAUC

Length

11 nucleotides

Bulged bases

6BY1|1|DA|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_392 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.3766

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6BY1|1|DA|G|1202
6BY1|1|DA|U|1203
6BY1|1|DA|A|1204
6BY1|1|DA|A|1205
6BY1|1|DA|G|1206
6BY1|1|DA|C|1207
*
6BY1|1|DA|G|1239
6BY1|1|DA|U|1240
6BY1|1|DA|A|1241
6BY1|1|DA|U|1242
6BY1|1|DA|C|1243

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15