IL_6BY1_414

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6BY1|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_414 not in the Motif Atlas

Homologous match to IL_9DFE_032

Geometric discrepancy: 0.5973

The information below is about IL_9DFE_032

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6BY1|1|DA|G|880
6BY1|1|DA|G|881
*
6BY1|1|DA|U|895
6BY1|1|DA|A|896
6BY1|1|DA|C|897

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BV

Transfer RNA; tRNA