3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_024 not in the Motif Atlas
Homologous match to IL_6CZR_135
Geometric discrepancy: 0.1032
The information below is about IL_6CZR_135
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.6
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
16

Unit IDs

6BZ6|1|QA|U|580
6BZ6|1|QA|G|581
6BZ6|1|QA|U|582
6BZ6|1|QA|A|583
6BZ6|1|QA|G|584
*
6BZ6|1|QA|U|757
6BZ6|1|QA|G|758
6BZ6|1|QA|A|759
6BZ6|1|QA|G|760
6BZ6|1|QA|G|761

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QL
30S ribosomal protein S12
Chain QO
30S ribosomal protein S15
Chain QQ
30S ribosomal protein S17
Chain RA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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