IL_6BZ6_048

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6BZ6|1|QA|U|1257, 6BZ6|1|QA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_048 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1839

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6BZ6|1|QA|G|1255
6BZ6|1|QA|A|1256
6BZ6|1|QA|U|1257
6BZ6|1|QA|G|1258
*
6BZ6|1|QA|C|1277
6BZ6|1|QA|U|1278
6BZ6|1|QA|A|1279
6BZ6|1|QA|A|1280
6BZ6|1|QA|U|1281
6BZ6|1|QA|C|1282

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QJ

30S ribosomal protein S10

Chain QN

30S ribosomal protein S14 type Z