3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
6BZ6|1|RA|A|1127, 6BZ6|1|RA|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_099 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0661
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6BZ6|1|RA|G|1024
6BZ6|1|RA|G|1025
6BZ6|1|RA|U|1026
6BZ6|1|RA|A|1027
6BZ6|1|RA|A|1028
6BZ6|1|RA|A|1029
6BZ6|1|RA|G|1030
*
6BZ6|1|RA|C|1124
6BZ6|1|RA|G|1125
6BZ6|1|RA|A|1126
6BZ6|1|RA|A|1127
6BZ6|1|RA|A|1128
6BZ6|1|RA|A|1129
6BZ6|1|RA|U|1130
6BZ6|1|RA|G|1131
6BZ6|1|RA|A|1132
6BZ6|1|RA|U|1133
6BZ6|1|RA|C|1135
6BZ6|1|RA|G|1136
6BZ6|1|RA|G|1137
6BZ6|1|RA|G|1138
6BZ6|1|RA|G|1139
6BZ6|1|RA|C|1140

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R9
50S ribosomal protein L36
Chain RB
5S ribosomal RNA; 5S rRNA
Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13
Chain RQ
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1628 s