3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
CCGG*CG
Length
6 nucleotides
Bulged bases
6BZ6|1|RA|C|1838
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_129 not in the Motif Atlas
Homologous match to IL_5J7L_314
Geometric discrepancy: 0.1605
The information below is about IL_5J7L_314
Detailed Annotation
Minor groove platform, major groove intercalation
Broad Annotation
Minor groove platform, major groove intercalation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

6BZ6|1|RA|C|1837
6BZ6|1|RA|C|1838
6BZ6|1|RA|G|1839
6BZ6|1|RA|G|1840
*
6BZ6|1|RA|C|1902
6BZ6|1|RA|G|1903

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QA
Small subunit ribosomal RNA; SSU rRNA
Chain RD
50S ribosomal protein L2

Coloring options:


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