IL_6BZ6_193

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_193 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.0795

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6BZ6|1|XA|C|504
6BZ6|1|XA|G|505
6BZ6|1|XA|G|506
6BZ6|1|XA|C|507
6BZ6|1|XA|C|508
6BZ6|1|XA|A|509
6BZ6|1|XA|A|510
6BZ6|1|XA|C|511
*
6BZ6|1|XA|G|540
6BZ6|1|XA|G|541

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12