IL_6BZ6_228

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_228 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1308

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6BZ6|1|XA|G|1401
6BZ6|1|XA|C|1402
6BZ6|1|XA|C|1403
6BZ6|1|XA|C|1404
*
6BZ6|1|XA|G|1497
6BZ6|1|XA|U|1498
6BZ6|1|XA|A|1499
6BZ6|1|XA|A|1500
6BZ6|1|XA|C|1501

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

messenger RNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA