3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
UGUAG*CGAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_262 not in the Motif Atlas
Geometric match to IL_7RQB_027
Geometric discrepancy: 0.1966
The information below is about IL_7RQB_027
Detailed Annotation
5x5 Sarcin-Ricin with intercalated A; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_38862.1
Basepair signature
cWW-L-R-tWH-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6BZ6|1|YA|U|858
6BZ6|1|YA|G|859
6BZ6|1|YA|U|860
6BZ6|1|YA|A|861
6BZ6|1|YA|G|862
*
6BZ6|1|YA|C|915
6BZ6|1|YA|G|916
6BZ6|1|YA|A|917
6BZ6|1|YA|A|918
6BZ6|1|YA|G|919

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y0
50S ribosomal protein L27
Chain Y3
50S ribosomal protein L30
Chain YB
5S ribosomal RNA; 5S rRNA
Chain YQ
50S ribosomal protein L16

Coloring options:


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