3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
GGAAU*GGAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ6_366 not in the Motif Atlas
Homologous match to IL_4LFB_065
Geometric discrepancy: 0.0946
The information below is about IL_4LFB_065
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6BZ6|1|XA|G|673
6BZ6|1|XA|G|674
6BZ6|1|XA|A|675
6BZ6|1|XA|A|676
6BZ6|1|XA|U|677
*
6BZ6|1|XA|G|713
6BZ6|1|XA|G|714
6BZ6|1|XA|A|715
6BZ6|1|XA|A|716
6BZ6|1|XA|C|717

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XF
30S ribosomal protein S6
Chain XK
30S ribosomal protein S11
Chain XR
30S ribosomal protein S18
Chain YD
50S ribosomal protein L2

Coloring options:


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