IL_6BZ7_129

3D structure

PDB id

6BZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G299A point mutation and near-cognate ASL Leucine in A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.68 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6BZ7|1|RA|G|1801, 6BZ7|1|RA|G|1816, 6BZ7|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ7_129 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1103

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6BZ7|1|RA|U|1798
6BZ7|1|RA|G|1799
6BZ7|1|RA|C|1800
6BZ7|1|RA|G|1801
6BZ7|1|RA|A|1802
6BZ7|1|RA|A|1803
6BZ7|1|RA|C|1804
*
6BZ7|1|RA|G|1813
6BZ7|1|RA|G|1814
6BZ7|1|RA|A|1815
6BZ7|1|RA|G|1816
6BZ7|1|RA|G|1817
6BZ7|1|RA|U|1818
6BZ7|1|RA|A|1819
6BZ7|1|RA|U|1820
6BZ7|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2