3D structure

PDB id
6BZ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.74 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
6BZ8|1|XA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BZ8_202 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1348
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

6BZ8|1|XA|G|683
6BZ8|1|XA|A|684
6BZ8|1|XA|G|685
6BZ8|1|XA|U|686
6BZ8|1|XA|A|687
6BZ8|1|XA|G|688
*
6BZ8|1|XA|C|699
6BZ8|1|XA|G|700
6BZ8|1|XA|C|701
6BZ8|1|XA|A|702
6BZ8|1|XA|G|703
6BZ8|1|XA|A|704
6BZ8|1|XA|U|705
6BZ8|1|XA|A|706
6BZ8|1|XA|C|707

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XK
30S ribosomal protein S11
Chain YA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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