IL_6C0F_015
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUUU*AUUUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C0F_015 not in the Motif Atlas
- Geometric match to IL_5BTM_001
- Geometric discrepancy: 0.2446
- The information below is about IL_5BTM_001
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
6C0F|1|1|G|445
6C0F|1|1|U|446
6C0F|1|1|U|447
6C0F|1|1|U|448
6C0F|1|1|U|449
*
6C0F|1|1|A|485
6C0F|1|1|U|486
6C0F|1|1|U|487
6C0F|1|1|U|488
6C0F|1|1|C|489
Current chains
- Chain 1
- Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA
Nearby chains
- Chain A
- Ribosome biogenesis protein NSA1
- Chain D
- Protein MAK16
- Chain E
- 60S ribosomal protein L6-A
- Chain I
- Ribosome production factor 1
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