IL_6C0F_016

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCC*GAAUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C0F_016 not in the Motif Atlas

Geometric match to IL_4WF9_050

Geometric discrepancy: 0.3117

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6C0F|1|1|G|452
6C0F|1|1|C|453
6C0F|1|1|C|454
*
6C0F|1|1|G|476
6C0F|1|1|A|477
6C0F|1|1|A|478
6C0F|1|1|U|479
6C0F|1|1|C|480
6C0F|1|1|U|481
6C0F|1|1|C|482

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain A

Ribosome biogenesis protein NSA1

Chain D

Protein MAK16