IL_6C0F_054

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C0F_054 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2356

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6C0F|1|1|A|3342
6C0F|1|1|G|3343
6C0F|1|1|A|3344
6C0F|1|1|G|3345
*
6C0F|1|1|C|3360
6C0F|1|1|G|3361
6C0F|1|1|A|3362
6C0F|1|1|U|3363

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain q

Protein MAK11

Chain u

Ribosome biogenesis protein RLP24