IL_6C0F_060
3D structure
- PDB id
- 6C0F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast nucleolar pre-60S ribosomal subunit (state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAUA*UUAA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C0F_060 not in the Motif Atlas
- Geometric match to IL_8C3A_009
- Geometric discrepancy: 0.3484
- The information below is about IL_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6C0F|1|6|U|30
6C0F|1|6|G|31
6C0F|1|6|A|32
6C0F|1|6|U|33
6C0F|1|6|A|34
*
6C0F|1|6|U|45
6C0F|1|6|U|46
6C0F|1|6|A|47
6C0F|1|6|A|48
Current chains
- Chain 6
- ITS2
Nearby chains
- Chain K
- Proteasome-interacting protein CIC1
- Chain o
- Ribosome biogenesis protein 15
- Chain p
- ATP-dependent RNA helicase HAS1
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