IL_6C0F_061

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGCC*GUUGUU

Length

10 nucleotides

Bulged bases

6C0F|1|1|U|3354, 6C0F|1|1|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C0F_061 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2319

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6C0F|1|1|A|3347
6C0F|1|1|G|3348
6C0F|1|1|C|3349
6C0F|1|1|C|3350
*
6C0F|1|1|G|3353
6C0F|1|1|U|3354
6C0F|1|1|U|3355
6C0F|1|1|G|3356
6C0F|1|1|U|3357
6C0F|1|1|U|3358

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains