IL_6C4H_004

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

6C4H|1|A|G|776, 6C4H|1|A|A|788, 6C4H|1|A|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4H_004 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.1162

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

6C4H|1|A|G|775
6C4H|1|A|G|776
6C4H|1|A|G|777
*
6C4H|1|A|C|787
6C4H|1|A|A|788
6C4H|1|A|A|789
6C4H|1|A|U|790
6C4H|1|A|C|791

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2