IL_6C4H_030

3D structure

PDB id

6C4H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination (PTC region)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4H_030 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0672

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6C4H|1|A|G|1666
6C4H|1|A|G|1667
6C4H|1|A|A|1668
6C4H|1|A|A|1669
6C4H|1|A|C|1670
6C4H|1|A|U|1671
6C4H|1|A|A|1672
6C4H|1|A|G|1673
6C4H|1|A|G|1674
*
6C4H|1|A|C|1990
6C4H|1|A|U|1991
6C4H|1|A|G|1992
6C4H|1|A|U|1993
6C4H|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3