IL_6C4I_035

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_035 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.0629

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6C4I|1|A|U|1004
6C4I|1|A|C|1005
6C4I|1|A|C|1006
6C4I|1|A|C|1007
6C4I|1|A|A|1008
6C4I|1|A|A|1009
6C4I|1|A|A|1010
6C4I|1|A|G|1011
*
6C4I|1|A|C|1150
6C4I|1|A|A|1151

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L13

Chain R

50S ribosomal protein L20