IL_6C4I_042
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GUUGG*CCAUC
- Length
- 10 nucleotides
- Bulged bases
- 6C4I|1|A|U|1061
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C4I_042 not in the Motif Atlas
- Geometric match to IL_4V9F_043
- Geometric discrepancy: 0.28
- The information below is about IL_4V9F_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6C4I|1|A|G|1059
6C4I|1|A|U|1060
6C4I|1|A|U|1061
6C4I|1|A|G|1062
6C4I|1|A|G|1063
*
6C4I|1|A|C|1075
6C4I|1|A|C|1076
6C4I|1|A|A|1077
6C4I|1|A|U|1078
6C4I|1|A|C|1079
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain I
- 50S ribosomal protein L10
- Chain J
- 50S ribosomal protein L11
- Chain N
- 50S ribosomal protein L16
Coloring options: