IL_6C4I_046

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6C4I|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_046 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0736

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6C4I|1|A|C|1208
6C4I|1|A|U|1209
6C4I|1|A|G|1210
6C4I|1|A|C|1211
6C4I|1|A|G|1212
6C4I|1|A|A|1213
6C4I|1|A|A|1214
6C4I|1|A|G|1215
*
6C4I|1|A|U|1234
6C4I|1|A|G|1235
6C4I|1|A|G|1236
6C4I|1|A|A|1237
6C4I|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain R

50S ribosomal protein L20