IL_6C4I_057

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6C4I|1|A|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_057 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0766

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6C4I|1|A|C|1437
6C4I|1|A|U|1438
6C4I|1|A|A|1439
6C4I|1|A|U|1440
*
6C4I|1|A|A|1551
6C4I|1|A|A|1552
6C4I|1|A|A|1553
6C4I|1|A|U|1554
6C4I|1|A|G|1555

Current chains

Chain A

23S rRNA

Nearby chains