IL_6C4I_070

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UGAGG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_070 not in the Motif Atlas

Homologous match to IL_5J7L_310

Geometric discrepancy: 0.1054

The information below is about IL_5J7L_310

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6C4I|1|A|U|1720
6C4I|1|A|G|1721
6C4I|1|A|A|1722
6C4I|1|A|G|1723
6C4I|1|A|G|1724
*
6C4I|1|A|U|1736
6C4I|1|A|G|1737
6C4I|1|A|G|1738
6C4I|1|A|A|1739
6C4I|1|A|G|1740

Current chains

Chain A

23S rRNA

Nearby chains