IL_6C4I_087

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GUGUAGGAUAGG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_087 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.5073

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6C4I|1|A|G|2110
6C4I|1|A|U|2111
6C4I|1|A|G|2112
6C4I|1|A|U|2113
6C4I|1|A|A|2114
6C4I|1|A|G|2115
6C4I|1|A|G|2116
6C4I|1|A|A|2117
6C4I|1|A|U|2118
6C4I|1|A|A|2119
6C4I|1|A|G|2120
6C4I|1|A|G|2121
*
6C4I|1|A|C|2177
6C4I|1|A|C|2178
6C4I|1|A|C|2179

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA