IL_6C4I_129

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6C4I|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_129 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.109

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6C4I|1|a|G|147
6C4I|1|a|G|148
6C4I|1|a|A|149
6C4I|1|a|U|150
6C4I|1|a|A|151
6C4I|1|a|A|152
6C4I|1|a|C|153
*
6C4I|1|a|G|168
6C4I|1|a|C|169
6C4I|1|a|U|170
6C4I|1|a|A|171
6C4I|1|a|A|172
6C4I|1|a|U|173
6C4I|1|a|A|174
6C4I|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20