IL_6C4I_140

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_140 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1197

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6C4I|1|a|G|450
6C4I|1|a|A|451
6C4I|1|a|A|452
6C4I|1|a|G|453
6C4I|1|a|G|454
6C4I|1|a|G|455
*
6C4I|1|a|C|477
6C4I|1|a|A|478
6C4I|1|a|U|479
6C4I|1|a|U|480
6C4I|1|a|G|481
6C4I|1|a|A|482
6C4I|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16