IL_6C4I_178
3D structure
- PDB id
- 6C4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the peptidyl transferase center during translation termination
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.24 Å
Loop
- Sequence
- GU(5MC)ACA*UGAAGUC
- Length
- 13 nucleotides
- Bulged bases
- 6C4I|1|a|A|1493
- QA status
- Modified nucleotides: 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C4I_178 not in the Motif Atlas
- Homologous match to IL_6CZR_369
- Geometric discrepancy: 0.4433
- The information below is about IL_6CZR_369
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_71294.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6C4I|1|a|G|1405
6C4I|1|a|U|1406
6C4I|1|a|5MC|1407
6C4I|1|a|A|1408
6C4I|1|a|C|1409
6C4I|1|a|A|1410
*
6C4I|1|a|U|1490
6C4I|1|a|G|1491
6C4I|1|a|A|1492
6C4I|1|a|A|1493
6C4I|1|a|G|1494
6C4I|1|a|U|1495
6C4I|1|a|C|1496
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain v
- Peptide chain release factor 2
- Chain w
- Alternative ribosome-rescue factor A
- Chain x
- Transfer RNA; tRNA
- Chain z
- mRNA
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