IL_6C4I_188

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_188 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0748

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6C4I|1|A|U|1851
6C4I|1|A|U|1852
6C4I|1|A|A|1853
6C4I|1|A|A|1854
6C4I|1|A|U|1855
6C4I|1|A|U|1856
6C4I|1|A|G|1857
6C4I|1|A|A|1858
6C4I|1|A|U|1859
6C4I|1|A|G|1860
*
6C4I|1|A|U|1882
6C4I|1|A|U|1883
6C4I|1|A|G|1884
6C4I|1|A|A|1885
6C4I|1|A|U|1886
6C4I|1|A|C|1887
6C4I|1|A|G|1888
6C4I|1|A|A|1889
6C4I|1|A|A|1890
6C4I|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain y

Transfer RNA; tRNA