3D structure

PDB id
6C4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the peptidyl transferase center during translation termination
Experimental method
ELECTRON MICROSCOPY
Resolution
3.24 Å

Loop

Sequence
UGA*UUG
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C4I_191 not in the Motif Atlas
Geometric match to IL_4M6D_011
Geometric discrepancy: 0.353
The information below is about IL_4M6D_011
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_01003.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
174

Unit IDs

6C4I|1|A|U|2099
6C4I|1|A|G|2100
6C4I|1|A|A|2101
*
6C4I|1|A|U|2188
6C4I|1|A|U|2189
6C4I|1|A|G|2190

Current chains

Chain A
23S rRNA

Nearby chains

Chain H
50S ribosomal protein L9
Chain k
30S ribosomal protein S11

Coloring options:


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