IL_6C5L_007

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAC*GG

Length

6 nucleotides

Bulged bases

6C5L|1|AA|G|129|||A, 6C5L|1|AA|A|130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_007 not in the Motif Atlas

Homologous match to IL_4LFB_007

Geometric discrepancy: 0.1576

The information below is about IL_4LFB_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_33761.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

3

Unit IDs

6C5L|1|AA|U|129
6C5L|1|AA|G|129|||A
6C5L|1|AA|A|130
6C5L|1|AA|C|131
*
6C5L|1|AA|G|231
6C5L|1|AA|G|232

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20