IL_6C5L_009

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6C5L|1|AA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_009 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1519

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6C5L|1|AA|G|148
6C5L|1|AA|A|149
6C5L|1|AA|C|150
6C5L|1|AA|A|151
6C5L|1|AA|A|152
6C5L|1|AA|C|153
*
6C5L|1|AA|G|168
6C5L|1|AA|C|169
6C5L|1|AA|U|170
6C5L|1|AA|A|171
6C5L|1|AA|A|172
6C5L|1|AA|U|173
6C5L|1|AA|C|174

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AT

30S ribosomal protein S20