IL_6C5L_018

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_018 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.1456

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6C5L|1|AA|G|446
6C5L|1|AA|G|447
6C5L|1|AA|A|448
6C5L|1|AA|C|449
6C5L|1|AA|G|450
*
6C5L|1|AA|C|483
6C5L|1|AA|G|484
6C5L|1|AA|G|485
6C5L|1|AA|U|486
6C5L|1|AA|A|487
6C5L|1|AA|C|488

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AP

30S ribosomal protein S16

Chain DI

50S ribosomal protein L9