IL_6C5L_027

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GA*UGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_027 not in the Motif Atlas

Geometric match to IL_4LFB_027

Geometric discrepancy: 0.0908

The information below is about IL_4LFB_027

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_74641.1

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

32

Unit IDs

6C5L|1|AA|G|654
6C5L|1|AA|A|655
*
6C5L|1|AA|U|751
6C5L|1|AA|G|752
6C5L|1|AA|A|753
6C5L|1|AA|C|754

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AO

30S ribosomal protein S15