IL_6C5L_029
3D structure
- PDB id
- 6C5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAGAG*UGGUC
- Length
- 11 nucleotides
- Bulged bases
- 6C5L|1|AA|A|665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6C5L_029 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3974
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6C5L|1|AA|G|661
6C5L|1|AA|G|662
6C5L|1|AA|A|663
6C5L|1|AA|G|664
6C5L|1|AA|A|665
6C5L|1|AA|G|666
*
6C5L|1|AA|U|740
6C5L|1|AA|G|741
6C5L|1|AA|G|742
6C5L|1|AA|U|743
6C5L|1|AA|C|744
Current chains
- Chain AA
- 16S rRNA
Nearby chains
- Chain AF
- 30S ribosomal protein S6
- Chain AO
- 30S ribosomal protein S15
- Chain AR
- 30S ribosomal protein S18
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