IL_6C5L_081

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_081 not in the Motif Atlas

Homologous match to IL_7RQB_021

Geometric discrepancy: 0.0952

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6C5L|1|BA|U|703
6C5L|1|BA|G|704
6C5L|1|BA|A|705
6C5L|1|BA|A|706
6C5L|1|BA|G|707
*
6C5L|1|BA|U|724
6C5L|1|BA|G|725
6C5L|1|BA|G|726
6C5L|1|BA|A|727
6C5L|1|BA|G|728

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2