IL_6C5L_091

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_091 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.186

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6C5L|1|BA|G|875
6C5L|1|BA|C|876
6C5L|1|BA|U|877
*
6C5L|1|BA|A|899
6C5L|1|BA|A|900
6C5L|1|BA|A|901
6C5L|1|BA|C|902

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25