IL_6C5L_092

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_092 not in the Motif Atlas

Homologous match to IL_7RQB_032

Geometric discrepancy: 0.1849

The information below is about IL_7RQB_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_80097.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6C5L|1|BA|U|877
6C5L|1|BA|A|878
6C5L|1|BA|G|879
*
6C5L|1|BA|C|898
6C5L|1|BA|A|899

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein L25