IL_6C5L_110

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

6C5L|1|BA|A|1379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_110 not in the Motif Atlas

Homologous match to IL_7RQB_052

Geometric discrepancy: 0.1389

The information below is about IL_7RQB_052

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6C5L|1|BA|C|1351
6C5L|1|BA|U|1352
6C5L|1|BA|A|1353
6C5L|1|BA|A|1354
6C5L|1|BA|G|1355
*
6C5L|1|BA|C|1376
6C5L|1|BA|G|1377
6C5L|1|BA|A|1378
6C5L|1|BA|A|1379
6C5L|1|BA|G|1380

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2