IL_6C5L_113

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_113 not in the Motif Atlas

Homologous match to IL_9DFE_054

Geometric discrepancy: 0.2207

The information below is about IL_9DFE_054

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

6C5L|1|BA|C|1417
6C5L|1|BA|G|1418
6C5L|1|BA|A|1419
6C5L|1|BA|U|1420
6C5L|1|BA|G|1421
*
6C5L|1|BA|C|1577
6C5L|1|BA|U|1578
6C5L|1|BA|A|1579
6C5L|1|BA|A|1580
6C5L|1|BA|G|1581

Current chains

Chain BA

23S rRNA

Nearby chains