IL_6C5L_124

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6C5L|1|BA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_124 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.1251

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6C5L|1|BA|A|1669
6C5L|1|BA|C|1670
6C5L|1|BA|U|1671
6C5L|1|BA|C|1672
6C5L|1|BA|U|1673
6C5L|1|BA|G|1674
*
6C5L|1|BA|C|1990
6C5L|1|BA|U|1991
6C5L|1|BA|G|1992
6C5L|1|BA|U|1993

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BO

50S ribosomal protein L14