3D structure

PDB id
6C5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AG*CCU
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6C5L_147 not in the Motif Atlas
Homologous match to IL_7A0S_083
Geometric discrepancy: 0.122
The information below is about IL_7A0S_083
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_26793.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
16

Unit IDs

6C5L|1|BA|A|2453
6C5L|1|BA|G|2454
*
6C5L|1|BA|C|2498
6C5L|1|BA|C|2499
6C5L|1|BA|U|2500

Current chains

Chain BA
23S rRNA

Nearby chains

Chain AY
Peptide chain release factor 2
Chain BE
50S ribosomal protein L3

Coloring options:


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