IL_15011.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5	1-5	2-4	2-5	3-4
1	IL_8DP3_001	8DP3	0.6182	1	Major groove platform	R	Enterovirus 5' cloverleaf cis-acting replication element	C	48	U	49	G	51	*	C	78	G	79	cWW			cWW
2	IL_9DFE_022	9DFE	0.2663	0	Single stack bend	1A	LSU rRNA	G	940	A	941	G	942	*	C	837	C	838	cWW			cWW
3	IL_8B0X_086	8B0X	0.2645	0	Single stack bend (H)	a	LSU rRNA	G	942	A	943	G	944	*	C	839	C	840	cWW			cWW
4	IL_9E6Q_033	9E6Q	0.2914	0		1	LSU rRNA	G	1061	A	1062	G	1063	*	C	955	C	956	cWW			cWW
5	IL_4WF9_028	4WF9	0.3135	0	Single stack bend	X	LSU rRNA	G	984	A	985	G	986	*	C	882	C	883	cWW			cWW
6	IL_7A0S_022	7A0S	0.2763	0	Single stack bend	X	LSU rRNA	G	951	A	952	G	953	*	C	850	C	851	cWW			cWW
7	IL_8P9A_233	8P9A	0.2180	0	Single stack bend	AR	LSU rRNA	G	56	A	57	G	58	*	C	27	C	28	cWW			cWW
8	IL_8OI5_004	8OI5	0.2156	0	Single stack bend (H)	1	LSU rRNA	G	55	A	56	G	57	*	C	26	C	27	cWW			cWW
9	IL_8GLP_004	8GLP	0.2099	0		L5	LSU rRNA	G	55	A	56	G	57	*	C	26	C	27	cWW			cWW
10	IL_9AXU_003	9AXU	0.2322	0		2	LSU rRNA	C	56	A	57	G	58	*	C	27	G	28	cWW			cWW
11	IL_9E6Q_005	9E6Q	0.2231	0	Single stack bend (H)	1	LSU rRNA	C	193	A	194	G	195	*	C	164	G	165	cWW			cWW
12	IL_4V9F_005	4V9F	0.2336	0	Single stack bend	0	LSU rRNA	G	182	A	183	G	184	*	C	153	C	154	cWW			cWW
13	IL_8B0X_069	8B0X	0.1585	0	Single stack bend (H)	a	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW			cWW
14	IL_4WF9_007	4WF9	0.1284	0	Single stack bend	X	LSU rRNA	G	215	A	216	G	217	*	C	186	C	187	cWW			cWW
15	IL_9DFE_005	9DFE	0.0000	0	Single stack bend	1A	LSU rRNA	G	212	A	213	G	214	*	C	183	C	184	cWW			cWW
16	IL_7MLX_001	7MLX	0.1518	0	Single stack bend	R	RNA (65-MER)	G	48	A	49	U	50	*	A	37	C	38	cWW			cWW
17	IL_7A0S_005	7A0S	0.1841	0	Single stack bend	X	LSU rRNA	A	189	A	190	G	191	*	C	160	U	161	cWW			cWW
18	IL_8GLP_054	8GLP	0.2721	0		L5	LSU rRNA	C	1474	G	1475	C	1476	*	G	1489	G	1490	cWW			cWW
19	IL_5IBB_340	5IBB	0.3126	0	Single base bend	1L	tRNA	G	63	U	64	C	65	*	G	50	C	51	cWW			cWW
20	IL_4LFB_041	4LFB	0.3271	0	Single stack bend	A	SSU rRNA	G	1002	G	1003	G	1003\|\|\|A	*	C	1038	C	1039	cWW			cWW
21	IL_6ZDQ_002	6ZDQ	0.2119	0		C	RNA	A	1283	U	1284	A	1285	*	U	1269	U	1270	cWW			ncWW
22	IL_8GLP_119	8GLP	0.2397	0	Single stack bend (H)	L5	LSU rRNA	C	3708	U	3709	G	3710	*	C	3741	G	3742	cWW			cWW
23	IL_9E6Q_082	9E6Q	0.2662	0	Single stack bend (H)	1	LSU rRNA	G	2514	U	2515	G	2516	*	C	2533	C	2534	cWW			cWW
24	IL_9AXU_066	9AXU	0.2448	0	Single stack bend (H)	2	LSU rRNA	G	1817	U	1818	G	1819	*	C	1705	C	1706	cWW	ncWW		cWW
25	IL_8P9A_298	8P9A	0.2200	0	Single stack bend	AR	LSU rRNA	G	1776	U	1777	G	1778	*	C	1670	C	1671	cWW			cWW
26	IL_8OI5_072	8OI5	0.2005	0	Single stack bend (H)	1	LSU rRNA	G	1772	U	1773	G	1774	*	C	1666	C	1667	cWW			cWW
27	IL_8GLP_098	8GLP	0.2181	0		L5	LSU rRNA	G	2722	U	2723	G	2724	*	C	2614	C	2615	cWW			cWW
28	IL_8OI5_012	8OI5	0.2718	0	Single stack bend (H)	1	LSU rRNA	A	236	U	237	G	238	*	C	177	U	178	cWW			cWW
29	IL_4C7O_002	4C7O	0.3076	0	Single stack bend	E	SRP RNA	A	36	U	37	G	38	*	C	8	U	9	cWW			cWW
30	IL_8P9A_238	8P9A	0.2222	0	Single stack bend	AR	LSU rRNA	C	163	A	164	A	165	*	U	257	G	258	cWW			cWW
31	IL_8OI5_137	8OI5	0.2212	0	Single stack bend	3	5S rRNA	C	47	C	48	G	49	*	C	29	G	30	cWW			cWW
32	IL_8P9A_367	8P9A	0.2383	0	Single stack bend	AS	5S rRNA	C	47	U	48	G	49	*	C	29	G	30	cWW			cWW
33	IL_7KGA_003	7KGA	0.2283	0	Single stack bend	A	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW			cWW
34	IL_8B0X_043	8B0X	0.2812	0	Single stack bend (H)	A	SSU rRNA	G	1041	A	1042	G	1043	*	C	998	C	999	cWW			cWW
35	IL_7A0S_054	7A0S	0.2215	0	Single stack bend	X	LSU rRNA	A	1463	A	1464	G	1465	*	C	1477	U	1478	cWW			cWW
36	IL_8B0X_031	8B0X	0.3084	0	Single stack bend (H)	A	SSU rRNA	G	745	A	746	A	747	*	U	659	C	660	cWW			cWW
37	IL_8B0X_089	8B0X	0.3117	0	Single stack bend (H)	a	LSU rRNA	G	928	A	929	A	930	*	U	852	C	853	cWW			cWW
38	IL_4V9F_081	4V9F	0.3115	0	Single stack bend	0	LSU rRNA	U	2436	A	2437	G	2438	*	C	2454	A	2455	cWW			cWW
39	IL_8OI5_088	8OI5	0.3408	0	Single stack bend (H)	1	LSU rRNA	C	2182	U	2183	G	2184	*	C	2215	G	2216	cWW			cWW
40	IL_8OI5_038	8OI5	0.3288	0		1	LSU rRNA	U	1107	A	1108	G	1109	*	C	965	A	966	cWW			cWW
41	IL_8P9A_263	8P9A	0.3465	0	Single stack bend	AR	LSU rRNA	U	1111	A	1112	G	1113	*	C	969	A	970	cWW			cWW
42	IL_9AXU_034	9AXU	0.3007	0	Single stack bend (H)	2	LSU rRNA	U	1142	A	1143	G	1144	*	C	1001	A	1002	cWW			cWW
43	IL_8B0X_183	8B0X	0.2544	0	Single stack bend (H)	a	LSU rRNA	OMC	2502	C	2503	U	2504	*	A	2457	G	2458	cWW			cWW
44	IL_4WF9_089	4WF9	0.3477	0	Single stack bend	X	LSU rRNA	C	2525	C	2526	U	2527	*	A	2480	G	2481	cWW			cWW
45	IL_7A0S_083	7A0S	0.3753	0	Single stack bend	X	LSU rRNA	C	2477	C	2478	U	2479	*	A	2432	G	2433	cWW			cWW
46	IL_9DFE_091	9DFE	0.3997	0	Single stack bend	1A	LSU rRNA	C	2498	C	2499	U	2500	*	A	2453	G	2454	cWW			cWW
47	IL_7KGA_006	7KGA	0.5826	0	Single stack bend	B	Flavivirus DB element	A	37	C	38	U	39	*	A	15	U	16	cWW			cWW
48	IL_9DFE_057	9DFE	0.5750	0	Single stack bend	1A	LSU rRNA	G	1448	A	1449	G	1450	*	C	1462	C	1463	cWW		ncWW	cWW
49	IL_5VSU_003	5VSU	0.5526	0	Single stack bend	I	U6 snRNA	A	75	A	76	G	77	*	C	69	U	70	cWW			cWW
50	IL_8GLP_141	8GLP	0.4405	1		L5	LSU rRNA	G	4347	A	4348	C	4350	*	G	4364	C	4365	cWW			cWW
51	IL_8P9A_328	8P9A	0.3536	1	Single stack bend	AR	LSU rRNA	G	2770	U	2771	C	2773	*	G	2787	C	2788	cWW			cWW
52	IL_4V83_236	4V83	0.4595	0	Single stack bend	CV	domain 3 of PSIC IGR IRES RNA	C	6155	A	6156	A	6157	*	U	6172	G	6173	cWW			cWW
53	IL_9AXU_095	9AXU	0.5278	1		2	LSU rRNA	U	2865	U	2866	C	2868	*	G	2882	A	2883	ncWW		ncWW	cWW
54	IL_5O6U_004	5O6U	0.6181	0		H+I	non-target DNA + target DNA	DC	3	DC	4	DG	5	*	DC	24	DG	25	ncWW		ncWW	ncWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAG*CC	14
GUG*CC	5
UAG*CA	4
AAG*CU	3
CUG*CG	3
CCU*AG	3
CAG*CG	2
AUG*CU	2
CAA*UG	2
CCG*CG	2
ACU*AU	2
GAA*UC	2
CUAG*CG	1
GAU*AC	1
CGC*GG	1
GUC*GC	1
GGG*CC	1
AUA*UU	1
(OMC)CU*AG	1
GACC*GC	1
GUCC*GC	1
UUCC*GA	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	28
U*	12
C*	8
G*	2
UC*	2
UA*	1
AC*	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_15011.2 Version IL_15011.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_15011.2 Version IL_15011.2 of this group appears in releases 4.1 to 4.1

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Csv

Json